MmuEX6032856 @ mm10
Exon Skipping
Gene
ENSMUSG00000025154 | Arhgap19
Description
Rho GTPase activating protein 19 [Source:MGI Symbol;Acc:MGI:1918335]
Coordinates
chr19:41781158-41784412:-
Coord C1 exon
chr19:41784326-41784412
Coord A exon
chr19:41782331-41782396
Coord C2 exon
chr19:41781158-41781349
Length
66 bp
Sequences
Splice sites
3' ss Seq
TCCTTTTATGTCCTGCCCAGGCT
3' ss Score
7.53
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTCACTGCAAATGATCTTCAGGAGAATATCATAAAGTTAAACACAGGAATGGCTTTTATGATCAAACACTCTCAGAAACTTTTTAAG
Seq A exon
GCTCCTGCTTATATTCGCGAATGTGCCAGATTATACTATTTGGGCTCCAGAACTCAAATGTCAAAG
Seq C2 exon
GATGACCTTGATCTGACAACCTCATGTCATAACATGTCCTTCCAGCTGGCAAGATGTCAGAGACAGAACAGGGTAGATCCTTCCTCTCAGCAGGAGGAGACCCAGCAGCACACAGAAGAGGCGCTGAGAGAACTCTTCCAGCATGTTCATAACTGGCCAGACTCCGCGAAGAAGAAACAACTTCTCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025154-'16-11,'16-10,18-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.571
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=PD(2.5=13.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACTGCAAATGATCTTCAGGAGA
R:
CCTCCTGCTGAGAGGAAGGAT
Band lengths:
183-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types