GgaEX1008755 @ galGal4
Exon Skipping
Gene
ENSGALG00000007609 | ARHGAP19
Description
rho GTPase-activating protein 19 [Source:RefSeq peptide;Acc:NP_001012927]
Coordinates
chr6:21919635-21921590:+
Coord C1 exon
chr6:21919635-21919721
Coord A exon
chr6:21920622-21920687
Coord C2 exon
chr6:21921402-21921590
Length
66 bp
Sequences
Splice sites
3' ss Seq
TTCTCTGTCCATCCTCACAGGCC
3' ss Score
11.29
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GTGACAGCAAATGACCTGCAAGAGAATATCACAAAGCTAAACAACGGAGTGACCTTCATGATCAAACACTCGCAGAAACTCTTCAAG
Seq A exon
GCCCCAGCTTACATCAGGGAGTGTGCCAGGCTGCATTACCTGGGATCCAGAGCCCACACATCGAAG
Seq C2 exon
GATGACCTGGATTTGCTAACATCTCCTGGTTCCAAGGAACTGCAACCCCTCAAGTCCCAGAAGCGAAGCCGTTTGGACTCCTGCCATCAGGAGGAGACCCAGCAGCGCACAGAGGAGGCACTGAGGGAGCTCTTTCGCCACGTACACAATATGCCTGACTCTGCAAAGAAGAAGAAGCTCATCCGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007609-'11-12,'11-10,12-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=0.023 C2=0.968
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=PD(2.5=13.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACAGCAAATGACCTGCAAGA
R:
CTGATGGCAGGAGTCCAAACG
Band lengths:
176-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]