RnoEX0010963 @ rn6
Exon Skipping
Gene
ENSRNOG00000048166 | Arhgap19
Description
Rho GTPase activating protein 19 [Source:RGD Symbol;Acc:1593044]
Coordinates
chr1:261026120-261030224:-
Coord C1 exon
chr1:261030138-261030224
Coord A exon
chr1:261028797-261028862
Coord C2 exon
chr1:261026120-261026311
Length
66 bp
Sequences
Splice sites
3' ss Seq
TTTCCTTTATGTCCTGCCAGGCC
3' ss Score
9.62
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTCACTGCAAATGACCTTCAGGAGAATATCACGAAGTTAAACACGGGGATGGCTTTTATGATCAAACACTCTCAGAAACTCTTTAAG
Seq A exon
GCCCCTGCTTATATTCGGGAATGTGCCAGATTGTACTATTTGGGCTCCAGAACTCAAGTGTCAAAG
Seq C2 exon
GATGATCTTGATCTGACAACCTCATGCCATGCCATGTCCTTCCAACGGGCAAGACCTCAGAAACAGAACAGGGTAGATTCCTATTCTCAGCAGGAGGAGACCCAGCAGCACACAGAAGAGGCGCTGAGAGAACTCTTCCAACATGTTCATAACTTGCCTGACTCGGCGAAGAAGAAACAACTTATCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048166-'15-11,'15-10,16-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=0.000 C2=0.812
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=PD(2.5=13.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACGGGGATGGCTTTTATGA
R:
AGTTCTCTCAGCGCCTCTTCT
Band lengths:
181-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]