Special

BtaEX6100024 @ bosTau6

Exon Skipping

Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MGB9]
Coordinates
chr26:18358795-18377719:-
Coord C1 exon
chr26:18377633-18377719
Coord A exon
chr26:18363030-18363095
Coord C2 exon
chr26:18358795-18358986
Length
66 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTATGTCTTGCCCAGGCT
3' ss Score
7.61
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GCCACTGCAAATGACCTTCAAGAGAATATCACAAAATTAAATGATGGGATGGCTTTTATGATTAAACACTCTCAGAAACTTTTTAAG
Seq A exon
GCTCCTGCTTATATTCGGGAATGTGCCAGATTGCACTATTTGGGTTCCAGAACTCAAGCATCAAAG
Seq C2 exon
GATGATCTTGATCTGATAGCTTCATGTCAAACCAGGTCCTTCCAACTGGCAAAATCTCAAAAATGGAACCGGGTTGATTCCTGCTCTCATCAGGAGGAGACCCAGCAGCGTACGGAAGAGGCACTAAGAGAATTGTTCCAACACGTTCATAATATGCCAGAGTCGGCGAAGAAGAAACAGCTCATCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040427-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.034 A=0.000 C2=0.594
Domain overlap (PFAM):

C1:
PF0062022=RhoGAP=PD(2.5=13.8)
A:
NO
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACTGCAAATGACCTTCAA
R:
GAGCAGGAATCAACCCGGTTC
Band lengths:
173-239
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]