DreEX6099802 @ danRer10
Exon Skipping
Gene
ENSDARG00000083189 | arhgap19
Description
Rho GTPase activating protein 19 [Source:ZFIN;Acc:ZDB-GENE-100922-157]
Coordinates
chr22:34988177-34990632:-
Coord C1 exon
chr22:34990546-34990632
Coord A exon
chr22:34988436-34988501
Coord C2 exon
chr22:34988177-34988353
Length
66 bp
Sequences
Splice sites
3' ss Seq
ATTGTTGTCTTGTTATAAAGGCT
3' ss Score
4.63
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
ATGAATGCCAGTGACCTTCAGGAGAACCTGAAGAAGCTCAACAGCGGGATGGCGTTTCTCATCAAACACTCACAGAAGATCTTTAGG
Seq A exon
GCTCCAGCGTATCTGAGAGAACATGCCAGACTCCAGTTCGCAAACACCAAAATCCTTCAATCCAAG
Seq C2 exon
GATGATCTGGAGCTGTTGTCGGTCAGCGGCTCTCCGTTCATCAGCGCGTGTAAGAGGAGCGGAGAGAGAGTCCGCTTAGACTCAGATAATCACACAGAAGAGGCGCTGAAAGAGCTTTACAGGCACGTCACTGACAACATGCCCAACTCCGCCAAGAAGAAGAAGCTCATCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000083189-'6-10,'6-9,8-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=0.000 C2=0.610
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=PD(2.5=13.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGATGGCGTTTCTCATCAA
R:
CAGTGACGTGCCTGTAAAGCT
Band lengths:
176-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]