BtaEX0001693 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018010 | ABCA4
Description
ATP-binding cassette, sub-family A (ABC1), member 4 [Source:HGNC Symbol;Acc:HGNC:34]
Coordinates
chr3:49648295-49649977:+
Coord C1 exon
chr3:49648295-49648419
Coord A exon
chr3:49648904-49649002
Coord C2 exon
chr3:49649791-49649977
Length
99 bp
Sequences
Splice sites
3' ss Seq
TATGCCCTCTCACTGTCTAGCAT
3' ss Score
8.35
5' ss Seq
TCCGTAAGT
5' ss Score
10.27
Exon sequences
Seq C1 exon
ATTGTGCTCCCGGCCACTTTTGTGTTTTTGGCTCTAATGCTTTCCCTCATCATCCCTCCTTTTGGTGAATATCCTGCTTTGACCCTTCACCCCTGGATGTATGGACAGCAGTACACCTTCTTCAG
Seq A exon
CATGGACCAGCTGGACAGTGAATGGCTCTCAGCACTTGCAGATGTCCTTGTGAATAAGCCAGGCTTTGGCAACCGCTGCCTGAAGGAAGAGTGGCTTCC
Seq C2 exon
GGAGTTCCCCTGTGGAAATTCAAGCCCCTGGAAGACTCCATCTGTGTCCCCGGATGTCACCCACTTGCTCCAACAGCAGAAATGGACAGCGGACCAACCTTCACCTTCCTGCAGGTGCAGCACCAGAGAGAAGCTCACCATGCTTCCTGAGTGCCCTGAGGGCGCAGGGGGCCTCCCACCCCCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018010_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.254
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCTTCACCCCTGGATGTA
R:
GTGAGCTTCTCTCTGGTGCTG
Band lengths:
183-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development