GgaEX6044195 @ galGal4
Exon Skipping
Gene
ENSGALG00000005752 | ABCA4
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N8D7]
Coordinates
chr8:12654934-12661862:+
Coord C1 exon
chr8:12654934-12655058
Coord A exon
chr8:12655665-12655763
Coord C2 exon
chr8:12661673-12661862
Length
99 bp
Sequences
Splice sites
3' ss Seq
GTCTCATCTTATTCCCTTAGCAA
3' ss Score
6.28
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
ATTGTTCTGCCTGCTAGTTTTGTGTTGCTGTCTTTAGTGCTTACAGTCATTATTCCTCCATTTGGAGAATATCCTGCCTTAACTTTAGACCCTTGGATCTATGGACAACAGTTTACTTTCTTCAG
Seq A exon
CAATGAGCGTCCTGGCAGTGAGCAGATGGTCTCCCTCACTAATGCTTTCTTAAATAAACCTGGATTTGGAAATCGCTGCTTGAAGAATCAGCCACTTCT
Seq C2 exon
GAACTTCCCATGCAATAATTCGCCTACTGCCTGGTATATACCTGCTGTTCATCCTAAGCTCAGCAGCCTCCTGCTGAGTCAAAAGTGGAGCTCTGAGAATCCTTCACCTTCCTGCAAGTGCAGCACTCACAAGAAACTCACTATGCTGCCGGAATGCCCTCCAGGAGCTGGAGGCCTCCCACCACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005752-'33-35,'33-33,34-35=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.029 C2=0.203
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTGCTAGTTTTGTGTTGC
R:
GCTGAGCTTAGGATGAACAGCA
Band lengths:
182-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]