DreEX6026095 @ danRer10
Exon Skipping
Gene
ENSDARG00000062661 | abca4b
Description
ATP-binding cassette, sub-family A (ABC1), member 4b [Source:ZFIN;Acc:ZDB-GENE-050517-4]
Coordinates
chr2:15606741-15609471:+
Coord C1 exon
chr2:15606741-15606865
Coord A exon
chr2:15606968-15607066
Coord C2 exon
chr2:15609279-15609471
Length
99 bp
Sequences
Splice sites
3' ss Seq
TCTGCTCTTGTGTATCTCAGTAA
3' ss Score
6.84
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
Exon sequences
Seq C1 exon
ATTGTTTTGCCAGCCAGTTTTGTCCTCATTGCTCTGGTCTTCACTATGATTGTGCCACCATTCGGGGAGTACCCCTGTCTGACCCTCACACCATGGATGTATGGACCACAGTTTACCTTCATCAG
Seq A exon
TAATGAGCAACCGTCACATCCAAAGATGAAGCACTTCATTCAGACGCTGCTGAAGGACCCTGGCATGGGAACCCGCTGTATGGCCAATCAGCCCTTAGA
Seq C2 exon
GAACATCTTTACCTGCTTAAACTCAAGCTCAGATTGGGAAGTTCCTCCAGTGTCTCCTGAGGTCAGCAACATCTTATCAAGTCCTGAATGGGATAGCAGAAACCCATCCCCATCCTGTGAATGCAGCACTGATTTGAAGCTCACTATGCTGCCAATGTGTCCTGCTGGAGCTGGAGGACTGCCACCACGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062661-'36-34,'36-33,37-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.059 C2=0.200
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF126982=ABC2_membrane_3=PU(0.3=1.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTACCCCTGTCTGACCCTC
R:
ATTCACAGGATGGGGATGGGT
Band lengths:
181-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]