BtaEX0001729 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006896 | ABCA9
Description
ATP-binding cassette, sub-family A (ABC1), member 9 [Source:HGNC Symbol;Acc:HGNC:39]
Coordinates
chr19:62143511-62148539:+
Coord C1 exon
chr19:62143511-62143602
Coord A exon
chr19:62147310-62147470
Coord C2 exon
chr19:62148464-62148539
Length
161 bp
Sequences
Splice sites
3' ss Seq
GAATGACCTTGTCTCTACAGGTG
3' ss Score
9.7
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
Exon sequences
Seq C1 exon
GGGAAGTCATAGGGCTCTTGGGACACAACGGAGCTGGTAAAAGCACAACCATCAAGATGATAACTGGAGACACAAGACCGACCGCAGGGCAG
Seq A exon
GTGCTGCTCGCAGGGGGCAGCGGAGGGGTGCCCCCGGGGTTCCTGGGGTACTGCCCCCAGGAGAGCGCGCTGTGGCCCGGCCTGACGGTGAGGGAGCACCTCGAGGTGTCGGCCGCTGTGAAAGGGCTGCAGAGGGCGGACGCCGCGGCTGCTATCACCAG
Seq C2 exon
GCTGGCGGATGCCCTGAAGCTGCAGGACCAGATGGCGCTCCCCGCCAAGGCCTTACCCGAGGGGGCAAAGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006896-'44-46,'44-43,45-46
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.226 A=0.056 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(21.3=100)
A:
PF0000522=ABC_tran=FE(37.6=100)
C2:
PF0000522=ABC_tran=FE(17.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATAGGGCTCTTGGGACACA
R:
CTTTCTCTTTGCCCCCTCGG
Band lengths:
162-323
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development