RnoEX6050316 @ rn6
Exon Skipping
Gene
ENSRNOG00000059326 | Abca9
Description
ATP binding cassette subfamily A member 9 [Source:RGD Symbol;Acc:1305931]
Coordinates
chr10:98417807-98422751:-
Coord C1 exon
chr10:98422660-98422751
Coord A exon
chr10:98420399-98420559
Coord C2 exon
chr10:98417807-98417882
Length
161 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTTTTGTGTGTACAGGTG
3' ss Score
10.56
5' ss Seq
ACGGTATGT
5' ss Score
9.94
Exon sequences
Seq C1 exon
GTGAAGTCCTAGGGCTCTTAGGACACAATGGAGCTGGCAAAAGTACAACCATTAGTATGATAACGGGAGACACAGTACCAACCGCAGGTCAG
Seq A exon
GTGTTTTTGAAAGGGAGTAGTGGCAGTGCTGCCCTCGGGTTCTTGGGGTACTGCCCTCAGGAGAATGTGCTGTGGCCCAACCTGACCGTGAAGGAACATCTGGAGGTGTATGCCGCTGTGAAGGGGCTGAGGAAGAAGGAGGCTATAGTCACCATCACACG
Seq C2 exon
GTTGGTGAATGCCCTCAAACTGCAGGACCAGTTGAAAGCTCTTGTCAAGACCCTGTCAGAGGGAGTGAAGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059326-'38-38,'38-37,39-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(21.3=100)
A:
PF0000522=ABC_tran=FE(37.6=100)
C2:
PF0000522=ABC_tran=FE(17.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTCCTAGGGCTCTTAGGACAC
R:
TCTCTTCACTCCCTCTGACAGG
Band lengths:
162-323
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]