GgaEX6016347 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BSC3]
Coordinates
chr18:8209835-8211134:-
Coord C1 exon
chr18:8211043-8211134
Coord A exon
chr18:8210199-8210347
Coord C2 exon
chr18:8209835-8209910
Length
149 bp
Sequences
Splice sites
3' ss Seq
TGAGCACTGTGTCTCTGCAGGTG
3' ss Score
10.37
5' ss Seq
CCGGTACGC
5' ss Score
8.81
Exon sequences
Seq C1 exon
GAGAGGTGTTAGGTCTGTTAGGACCCAATGGAGCTGGAAAGAGCACAACTATACGCATGGTTTCTGGAGACATAGCAGTGACTGCTGGGGAG
Seq A exon
GTGCTACTGCAGGGCTGCAGGGCTGCGGTGCCGGGCTGCTGCCCACAGGAGAACCCGCTGTGGTCGGACCTCACCGTGCTCCAGCATCTGGAGGCCTACGCTGCCGTGCGAGGGGTGAGGGGAGAGGATGCAGCTGTGTTCATCAGCCG
Seq C2 exon
TGTGGCCAAGGCCTTGGACCTCCAGAAGTGTTTAAAAACCCCAGCAAGGAGGCTGTCTGCTGGAGAAGCCAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021395-'35-32,'35-31,36-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(7.6=66.7)
A:
PF0000522=ABC_tran=FE(46.7=100)
C2:
PF0000522=ABC_tran=FE(23.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGGTGTTAGGTCTGTTAGGAC
R:
AGCCTCCTTGCTGGGGTTTTT
Band lengths:
146-295
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]