RnoEX0004983 @ rn6
Exon Skipping
Gene
ENSRNOG00000004147 | Abca8a
Description
ATP-binding cassette, subfamily A (ABC1), member 8a [Source:RGD Symbol;Acc:1307333]
Coordinates
chr10:98324223-98330443:-
Coord C1 exon
chr10:98330352-98330443
Coord A exon
chr10:98325906-98326066
Coord C2 exon
chr10:98324223-98324363
Length
161 bp
Sequences
Splice sites
3' ss Seq
CAGTGACCTTTTATCCATAGGTG
3' ss Score
8.41
5' ss Seq
AAGGTACAC
5' ss Score
7.56
Exon sequences
Seq C1 exon
GCGAGGTGGTCGGATTACTGGGACACAATGGAGCTGGGAAAAGTACATCCATTAAGATGATAACTGGGGAAATCAAGCCAAGTGCTGGACAG
Seq A exon
GTGCAGCTGAAAGGGAACAGCACAGGGGACACCCCGGAATTCCTAGGGTACTGTCCTCAGGAAAATGCTCTGTGGCAACACATGACTGTGAGGGAACACCTGGAGATATTTGCCGCCATAAAGGGGATGAGCAAAAGCGATGCTGCCGTGGCCATTGCAAG
Seq C2 exon
ATGTATTGGATCCATCCAACATCTAAAGAGCAAATTTGGCAAAGAATATCTCCTGGAGATGAAGGTGAAGACCCCCACACAGGTGGAGCCCCTCAACATGGAGATCATGAGGCTCTTCCCCCAGGCTGCTCGGCAGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004147_MULTIEX1-32/37=31-36
Average complexity
C2
Mappability confidence:
96%=97=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=0.111 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(21.3=100)
A:
PF0000522=ABC_tran=FE(37.6=100)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGTGGTCGGATTACTGGGA
R:
GAGCAGCCTGGGGGAAGA
Band lengths:
221-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]