MmuEX6090830 @ mm10
Exon Skipping
Gene
ENSMUSG00000041828 | Abca8a
Description
ATP-binding cassette, sub-family A (ABC1), member 8a [Source:MGI Symbol;Acc:MGI:2386846]
Coordinates
chr11:110031045-110036582:-
Coord C1 exon
chr11:110036491-110036582
Coord A exon
chr11:110031560-110031720
Coord C2 exon
chr11:110031045-110031120
Length
161 bp
Sequences
Splice sites
3' ss Seq
CAGTGACCTTCTCTCCATAGGTG
3' ss Score
10.75
5' ss Seq
AAGGTACAC
5' ss Score
7.56
Exon sequences
Seq C1 exon
GTGAGGTTGTAGGATTACTGGGACACAATGGAGCTGGTAAAAGTACATCCATTAAGATGATAACTGGAGAAACCAAGCCAAGCGCCGGACAG
Seq A exon
GTGCTGCTGAAGGGGAGCAGCACAGGGGACACCCCGGGGTTCCTGGGGTACTGTCCTCAGGAAAATGCTCTGTGGCTCAACCTGACAGTGAGGGAACACCTGGAGATATTTGCAGCCATAAAGGGGATGAGAAAAAGTGACGCGAACGTGGCCATCGAAAG
Seq C2 exon
GTTGGCAGATGCGCTCAAGCTGCAGGACCAGCTGAAGTCTCCTGTGAAGACGCTGTCAGAGGGAGTGAAGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041828-'47-50,'47-49,49-50=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.204 A=0.056 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(21.3=100)
A:
PF0000522=ABC_tran=FE(37.6=100)
C2:
PF0000522=ABC_tran=FE(17.7=100)
Main Skipping Isoform:
ENSMUST00000046223fB5143
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGTTGTAGGATTACTGGGACA
R:
TCTTCACTCCCTCTGACAGCG
Band lengths:
162-323
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types