BtaEX6091107 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006937 | ABCA10
Description
ATP-binding cassette, sub-family A (ABC1), member 10 [Source:HGNC Symbol;Acc:HGNC:30]
Coordinates
chr19:62000917-62002613:+
Coord C1 exon
chr19:62000917-62001008
Coord A exon
chr19:62002100-62002278
Coord C2 exon
chr19:62002538-62002613
Length
179 bp
Sequences
Splice sites
3' ss Seq
ACCTTTGCTGTTCGATGCAGGTG
3' ss Score
10.29
5' ss Seq
AAGGTGTGG
5' ss Score
5.28
Exon sequences
Seq C1 exon
GTGAAGTACTGGGACTGCTGGGGCACAATGGAGCTGGGAAGAGCACTTGTATTAAGATGATAACTGGAGACACAAAGCCGACCGCGGGAGTG
Seq A exon
GTGGTTTTCAGGGACAGCGGAACACCTCCGACGCGACAGGCAGGCGGCGGCTTCAGGCATCTGGGGTACTGTCCACAGGAGGACGTGCTGTGGCCCGACCTCACGGTCCGAGAACACCTGGACTTGTACTCGGCCGTGAAAGGCCTGACCAAAGAGGAGGCTGCTCTCAGCGTTTCAAG
Seq C2 exon
GCTGGCGGACGCGCTGAAGCTACAGGACCAGATGGCGCTCCCCGCCAAGGCCTTACCCGAGGGGGCCAAGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006937-'36-37,'36-36,38-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.177 A=0.200 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(20.4=100)
A:
PF0000522=ABC_tran=FE(40.1=100)
C2:
PF0000522=ABC_tran=FE(17.0=100)
Main Skipping Isoform:
ENSBTAT00000040376fB265
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGTACTGGGACTGCTGGG
R:
CTTTCTCTTGGCCCCCTCGG
Band lengths:
167-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]