BtaEX0002234 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018986 | ACSL4
Description
acyl-CoA synthetase long-chain family member 4 [Source:HGNC Symbol;Acc:HGNC:3571]
Coordinates
chrX:62507526-62521509:-
Coord C1 exon
chrX:62521409-62521509
Coord A exon
chrX:62507941-62508470
Coord C2 exon
chrX:62507526-62507703
Length
530 bp
Sequences
Splice sites
3' ss Seq
TTCATTGTCTTCACCTGCAGGTG
3' ss Score
12.3
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GATCTTTTCTTATGTCACCATACACATAAATATTGTCTCTTATTGCAGATTCAAATCCAGAAAGATATACGGGTTCTTCTTAAGAGAAAAAGAGAAAATCT
Seq A exon
GTGTACTTTATTGTCGGCTTCCAAAGATTACTAACTCTTTCTGTATCATTAAAATTGAACTGCCTTGACTATTCTGCTACTCTTACTGCTGCTCCCATTATTGCCTTCTTCAGCAAAATCAGGCTTTCCGAAGCCAAAGAATAACAAGAAATAAACATCATTTTAGAAGCCTTGCCACCATGAAACTTAAGCAAAGTGTGCTCACCATTATTTTGCTGCCTATCCACCTGTTAATAACAATATACAGTGCCCTTATATTTATTCCATGGTATTTTCTTACCAATGCTAAGAAGAAAAACGCTATGGCAAAGAGAATAAAAGCTAAGCCCACCTCAGACAAACCTGGAAGTCCATATCGTTCTGTCACGCACTTCGACTCGCTAGCTGTCATAGACATCCCTGGAGCAGACACCCTGGATAAATTATTCGATCATGCTGTCTCCAAGTTTGGGAAGAAGGAGAGCCTGGGAACCAGGGAAGTCCTAAGTGAAGAAAATGAAATGCAGCCAAATGGAAAGGTTTTTAAGAAG
Seq C2 exon
TTAATTCTCGGGAATTATAAATGGTTGAACTATCTCGAAGTGAACCGCCGAGTGAATAACTTCGGTAGTGGACTCACTGCACTGGGACTGAAGCCAAAGAGCACCATTGCCATTTTCTGTGAGACCAGGGCTGAATGGATGATTGCGGCACAGACCTGCTTTAAGTACAATTTTCCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018986-'1-2,'1-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.117 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0050123=AMP-binding=PU(3.1=11.7)
C2:
PF0050123=AMP-binding=FE(12.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCTTTTCTTATGTCACCATACACA
R:
AGGAAAATTGTACTTAAAGCAGGTCT
Band lengths:
278-808
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development