MmuEX6046220 @ mm9
Exon Skipping
Gene
ENSMUSG00000031278 | Acsl4
Description
acyl-CoA synthetase long-chain family member 4 [Source:MGI Symbol;Acc:MGI:1354713]
Coordinates
chrX:138785503-138795027:-
Coord C1 exon
chrX:138794930-138795027
Coord A exon
chrX:138785922-138786161
Coord C2 exon
chrX:138785503-138785680
Length
240 bp
Sequences
Splice sites
3' ss Seq
ATTTTCTTACCAATGCCAAGAAG
3' ss Score
-1.28
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
ATTCATGTCCCATGTCACTGTTTTAATAAATGTTGTCTCTCACTGCAGACTCAGATCACAGGAGATACACCTGTTCTTAAAAGTGAAAGAAGAAATCT
Seq A exon
AAGAAAAACGCTATGGCAAAGAGAATAAAAGCTAAGCCCACTTCAGACAAACCTGGAAGTCCATATCGCTCTGTCACACACTTCGACTCACTAGCTGTCATAGACATCCCTGGAGCAGATACTCTGGATAAATTATTTGACCATGCTGTAGCCAAATTTGGGAAGAAGGACAGCCTTGGAACCCGGGAGATCCTGAGTGAAGAAAATGAAATGCAGCCAAATGGAAAGGTTTTTAAGAAG
Seq C2 exon
TTAATTCTTGGGAATTATAAATGGATAAACTATCTTGAAGTGAACTGCAGAGTGAATAACTTTGGAAGTGGCCTCACTGCATTGGGACTGAAACCAAAGAACACCATTGCCATTTTCTGTGAGACCAGGGCAGAGTGGATGATTGCAGCACAGACTTGCTTTAAGTACAACTTTCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031278-'1-6,'1-4,3-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.160 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0050123=AMP-binding=PU(3.1=19.7)
C2:
PF0050123=AMP-binding=FE(12.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCATGTCCCATGTCACTGT
R:
GTGGAAAGTTGTACTTAAAGCAAGTC
Band lengths:
276-516
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: