DreEX0010833 @ danRer10
Exon Skipping
Gene
ENSDARG00000004078 | acsl4a
Description
acyl-CoA synthetase long-chain family member 4a [Source:ZFIN;Acc:ZDB-GENE-040426-1565]
Coordinates
chr14:28132989-28138241:+
Coord C1 exon
chr14:28132989-28133053
Coord A exon
chr14:28136863-28137346
Coord C2 exon
chr14:28138064-28138241
Length
484 bp
Sequences
Splice sites
3' ss Seq
GTTATTGTCATTCTCATCAGGTT
3' ss Score
7.85
5' ss Seq
AAGGTACAT
5' ss Score
7.87
Exon sequences
Seq C1 exon
ATTGCGCTTGGCAAGCAGAGACACGAATGCCCGATCCGGCTGAGGAGGAAAGAGACTAAAAGCCG
Seq A exon
GTTGCACATTTTGGAGTCGCATATTAGACACTTCTAGAATCTTTTTGAACTTTGACCCAAGGCAACAATCTTAGTGTATCTCAGGCTCTGCCTGACCCTTCATCCTTCAGTCCCCTCCAGCTTCTCAGCAGACGTGCGTCTGAACATGGACCTCAGTGCCGTTCTCTTGTTTCCAGTACATGCAGTAGTGTGGCTCTACTCCCTCTTGAGCTTTCTGCCATGGTACTTTCTGACAGGAGCCCAGGAAAAGAAAGCCTTGGCAAAGAGGCTCAAATCCAAGTCAACCAGCGATCAACCGGATGGACCATATCGCTCCACGGATCGCTTCGAGTCCCTGGTCACAGTGGACTTCCCCGGAAAAGACACCCTTGATAAGCTGTTTGACTATGCAGTAGAGCGTTTTGGTAAATTAGACTGCCTTGGAACCCGAGAAGTTCTGAGTGAAGACAATGAGACTCAGCCAAATGGAAAAGTCTTCAAAAAG
Seq C2 exon
TTGATTCTTGGTGAATATAAATGGAAGTCCTATGAGGAGTTAGACATTGAAGTCAGTCATTTTGGGAGCGGACTGGCAGCACTAGGACAACAGCCAAAAAGCACCATTGCCATTTTCTGTGAGACGCGGGCTGAATGGATGATCACCGCTCAAGCCTGCTTCAGACGCAACTTCCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004078-'1-4,'1-0,6-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.071 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0050123=AMP-binding=PU(3.2=13.3)
C2:
PF0050123=AMP-binding=FE(12.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGGCAAGCAGAGACACGAA
R:
GGAAGTTGCGTCTGAAGCAGG
Band lengths:
234-718
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]