RnoEX0006178 @ rn6
Exon Skipping
Gene
ENSRNOG00000019180 | Acsl4
Description
acyl-CoA synthetase long-chain family member 4 [Source:RGD Symbol;Acc:69401]
Coordinates
chrX:113625311-113634909:-
Coord C1 exon
chrX:113634866-113634909
Coord A exon
chrX:113625716-113625955
Coord C2 exon
chrX:113625311-113625488
Length
240 bp
Sequences
Splice sites
3' ss Seq
ATTTTCTTACCAATGCCAAGAAG
3' ss Score
-1.28
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
ATCCCAGGAGATTGACCTGTTCTTAAAAGTGAAAGAAGAAATCT
Seq A exon
AAGAAAAACGCTATGGCAAAGAGAATAAAAGCTAAGCCCACTTCAGACAAACCCGGAAGTCCATATCGCTCTGTCACGCACTTCGACTCACTAGCTGTCATAGACATCCCTGGAGCAGATACTCTGGATAAATTATTTGACCATGCTGTAGCCAAGTTTGGGAAGAAGGACAGCCTGGGGACCCGGGAGATCCTGAGCGAAGAAAATGAAATGCAGCCAAATGGAAAGGTTTTTAAGAAG
Seq C2 exon
TTAATTCTTGGGAATTATAAATGGATAAACTATCTTGAAGTGAACTGCCGAGTGAATAACTTTGGAAGTGGCCTCACTGCACTGGGACTGAAACCAAAGAACACCATTGCCATTTTCTGTGAGACCAGGGCGGAGTGGATGATTGCAGCGCAGACCTGCTTTAAGTACAACTTTCCGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019180-'7-9,'7-6,9-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.224 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0050123=AMP-binding=PU(3.1=19.7)
C2:
PF0050123=AMP-binding=FE(12.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGATTGACCTGTTCTTAAAAGTGA
R:
GCGGAAAGTTGTACTTAAAGCAGG
Band lengths:
216-456
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]