HsaEX6052903 @ hg19
Exon Skipping
Gene
ENSG00000068366 | ACSL4
Description
acyl-CoA synthetase long-chain family member 4 [Source:HGNC Symbol;Acc:3571]
Coordinates
chrX:108925948-108935376:-
Coord C1 exon
chrX:108935265-108935376
Coord A exon
chrX:108926365-108926604
Coord C2 exon
chrX:108925948-108926125
Length
240 bp
Sequences
Splice sites
3' ss Seq
ATTTTCTTACCAATGCCAAGAAG
3' ss Score
-1.28
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
ACTCTAGAGCATTAAAAGTGTCTTCAACATGGCAGCTGAGGTGCTTTCTTTGCTGGGAAAAGCTGCAAAGAGACTGGCAGAATGGCGACTTCAGGAGTTAATACCTCTCCAG
Seq A exon
AAGAAAAACGCTATGGCAAAGAGAATAAAAGCTAAGCCCACTTCAGACAAACCTGGAAGTCCATATCGCTCTGTCACACACTTCGACTCACTAGCTGTAATAGACATCCCTGGAGCAGATACTCTGGATAAATTATTTGACCATGCTGTATCCAAGTTTGGGAAGAAGGACAGCCTTGGGACCAGGGAAATCCTAAGTGAAGAAAATGAAATGCAGCCAAATGGAAAAGTTTTTAAGAAG
Seq C2 exon
TTAATTCTTGGGAATTATAAATGGATGAACTATCTTGAAGTGAATCGCAGAGTGAATAACTTTGGTAGTGGACTCACTGCACTGGGACTAAAACCAAAGAACACCATTGCCATCTTCTGTGAGACCAGGGCCGAATGGATGATTGCAGCACAGACCTGCTTTAAGTACAACTTTCCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000068366-'4-11,'4-9,8-11=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.148 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0050123=AMP-binding=PU(16.0=19.7)
C2:
PF0050123=AMP-binding=FE(12.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTAGAGCATTAAAAGTGTCTTCA
R:
AGTTGTACTTAAAGCAGGTCTGTGC
Band lengths:
284-524
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)