GgaEX0011598 @ galGal4
Exon Skipping
Gene
ENSGALG00000008088 | ACSL4
Description
acyl-CoA synthetase long-chain family member 4 [Source:HGNC Symbol;Acc:HGNC:3571]
Coordinates
chr4:13721076-13743729:+
Coord C1 exon
chr4:13721076-13721505
Coord A exon
chr4:13743025-13743264
Coord C2 exon
chr4:13743552-13743729
Length
240 bp
Sequences
Splice sites
3' ss Seq
ATTTTCTTACCAACGCTAAGAAG
3' ss Score
-2.07
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
GAGAGAGTGCCCGCAGGGCCCTCGGCTCAGCCCGGCGGTATCCAAGCCCCACATTTCGGCGGGGTGAAGGTCTCGAGCACCCGGCCCTGCCGGCGGCCCGCGCTCCGCCCCGGCCACACAGAAGCGGGGGCCCCGACCCGCGCCCCCCCCTTCCTCCGGGCGGCGCGTCAGCAAGGAGGAGGGCTGCACGGCGGCGCGGGGGCTCGCTCCTCCTCCTCCTCCCGCTTCCCCTCACCGAGCCTTCTCCCCTCCCTCCCGCTCTCAGCCATTTTAGCAGCCGGCCGAGCCGCGCTCTCCGCTAGCAGCGCGGGGCCGAAGCCGGGCGGGCCGAGCTGAGCTGAGCTGAGCTGAGGTGAGCGCACGCGGCGCAGCATAACGGCCGGCGGGGCCGAGGTCGGGCCGCTCCCTGCCCGCTGTCCGGGGGGACGAG
Seq A exon
AAGAAAAAGGCTATGGCAAAACGTTTAAAAGCTAAGCCCATCTCGGACAAACCTGGAAGCCCCTACCGCTCCGTCACTCATCTTGACTCACTAGCAAACATAAACATTCCTGGAGCAGACACGTTGGACAAACTGTTTGACCACGCGTTAGCAAAGTTTGGGAAAAAGGACTGTCTTGGGACCAGAGAAATACTGAGTGAAGAAAATGAAATGCAACCAAACGGAAAAGTTTTCAAAAAG
Seq C2 exon
TTAATCTTAGGAACCTACAGATGGCTGTCCTATGAAGAAGTAAATCAGAAAGTGAATCGCTTGGGGAGCGGACTGATAGCCCTGGGACTAACCCCAAAGAGCACCGTTGTTATCTTTTGCGAGACCCGAGCAGAATGGATGATCGCAGCCCTGGCCTGCTTCAAGTACAACTTTCCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008088_MULTIEX1-3/4=C1-4
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.066 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0050123=AMP-binding=PU(3.1=19.7)
C2:
PF0050123=AMP-binding=FE(12.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCAGCCATTTTAGCAGCCG
R:
GCTCGGGTCTCGCAAAAGATA
Band lengths:
302-542
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]