BtaEX0002859 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009897 | AGPS
Description
Bos taurus alkylglycerone phosphate synthase (AGPS), mRNA. [Source:RefSeq mRNA;Acc:NM_001206719]
Coordinates
chr2:19384961-19403135:-
Coord C1 exon
chr2:19403027-19403135
Coord A exon
chr2:19395482-19395609
Coord C2 exon
chr2:19384961-19385012
Length
128 bp
Sequences
Splice sites
3' ss Seq
TATTCCCCCTTCTTTTTCAGGAA
3' ss Score
12.22
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTGGTTCATATAAAAATGGTAACACCTAGAGGTATAATAGAAAAAAGCTGTCAAGGACCTCGAATGTCAACAGGCCCTGATATCCATCACTTCATCATGGGATCTGAAG
Seq A exon
GAACTCTTGGTGTGATAACAGAAGCTACAATAAAAATCAGACCAATTCCTGAATACCAAAAGTATGGCTCAGTAGCTTTCCCTAATTTTGAACAAGGAGTAGCCTGTTTAAGAGAAATTGCAAAACAG
Seq C2 exon
AGATGTGCTCCTGCATCTATTCGCCTAATGGACAACGAGCAGTTTCATTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009897_MULTIEX1-5/12=4-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.135 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0156518=FAD_binding_4=PD(10.5=40.5)
A:
PF0291314=FAD-oxidase_C=PU(41.5=62.8)
C2:
PF0291314=FAD-oxidase_C=FE(26.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGTCAAGGACCTCGAATG
R:
AAATGAAACTGCTCGTTGTCCA
Band lengths:
114-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development