MmuEX0004279 @ mm9
Exon Skipping
Gene
ENSMUSG00000042410 | Agps
Description
alkylglycerone phosphate synthase [Source:MGI Symbol;Acc:MGI:2443065]
Coordinates
chr2:75706362-75726224:+
Coord C1 exon
chr2:75706362-75706470
Coord A exon
chr2:75715528-75715655
Coord C2 exon
chr2:75726173-75726224
Length
128 bp
Sequences
Splice sites
3' ss Seq
TTATTTCCCTTCTTTTTCAGGAA
3' ss Score
12.77
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTGGTTCATATGAAAATGGTAACACCTAGAGGTGTAATAGAGAAAAGCTCCCAAGGACCTCGTATGTCAACGGGCCCTGATATCCATCACTTCATTATGGGATCTGAAG
Seq A exon
GAACTCTTGGTGTAATAACAGAAGCTACAATAAAGATCAGACCAACCCCTGAGTACCAGAAGTACGGTTCGGTGGCTTTCCCTAACTTTGAACAAGGTGTAGCCTGTTTAAGAGAAATTGCAAAGCAG
Seq C2 exon
AGATGTGCTCCTGCATCTATCCGCCTCATGGACAACCAGCAGTTCCAGTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042410-'12-11,'12-10,14-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.399 A=0.006 C2=0.000
Domain overlap (PFAM):
C1:
PF0156518=FAD_binding_4=PD(11.1=43.2)
A:
PF0291314=FAD-oxidase_C=PU(24.1=62.8)
C2:
PF0291314=FAD-oxidase_C=FE(15.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTCATATGAAAATGGTAACACCT
R:
TGGAACTGCTGGTTGTCCATG
Band lengths:
155-283
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: