DreEX6034717 @ danRer10
Exon Skipping
Gene
ENSDARG00000042821 | agps
Description
alkylglycerone phosphate synthase [Source:ZFIN;Acc:ZDB-GENE-031118-14]
Coordinates
chr9:1607592-1611082:-
Coord C1 exon
chr9:1610974-1611082
Coord A exon
chr9:1607934-1608061
Coord C2 exon
chr9:1607592-1607643
Length
128 bp
Sequences
Splice sites
3' ss Seq
CTGTGTGTGTTTCTCCTCAGGAA
3' ss Score
12.35
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
GTGGTGCATATAAAGATGGTGACCCCTAGAGGAGTGATTGAGAAGAGCTGTCTTGGGCCCCGCATGTCCACCGGCCCTGACATACACCACTTCATCATGGGCTCTGAGG
Seq A exon
GAACTCTGGGAGTGGTGACTGAGGTCACGATGAAGATCCGACCCATTCCTGAGTACCAGAAGTACGGCTCGGTGGTGTTCCCCAACTTCCAGCAGGGTGTGGCGTGTCTGAGAGAGGTGGCCCGACAG
Seq C2 exon
AGATGTGCTCCAGCATCTATTCGGCTAATGGACAACGAGCAGTTTCAGTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042821-'12-13,'12-12,14-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0156518=FAD_binding_4=PD(10.5=40.5)
A:
PF0291314=FAD-oxidase_C=PU(11.2=62.8)
C2:
PF0291314=FAD-oxidase_C=FE(6.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCATATAAAGATGGTGACCCC
R:
ACTGAAACTGCTCGTTGTCCA
Band lengths:
156-284
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]