HsaEX0003146 @ hg38
Exon Skipping
Gene
ENSG00000018510 | AGPS
Description
alkylglycerone phosphate synthase [Source:HGNC Symbol;Acc:HGNC:327]
Coordinates
chr2:177468416-177521368:+
Coord C1 exon
chr2:177468416-177468524
Coord A exon
chr2:177482059-177482186
Coord C2 exon
chr2:177521269-177521368
Length
128 bp
Sequences
Splice sites
3' ss Seq
TTCCCCCTTCTTTTTTTCAGGAA
3' ss Score
12.21
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTGGTTCATATAAAAATGGTAACACCTAGAGGTATAATAGAAAAAAGCTGTCAAGGACCTCGTATGTCAACAGGCCCTGATATCCATCACTTCATCATGGGATCTGAAG
Seq A exon
GAACTCTTGGTGTAATAACAGAAGCTACAATAAAAATCAGACCAGTCCCTGAATACCAAAAGTATGGCTCAGTAGCTTTCCCTAATTTTGAACAAGGAGTAGCCTGTTTAAGAGAAATTGCAAAACAG
Seq C2 exon
GGTGACGCAGACTTACGATGCAGGTGCTTGTATCTACTTCTATTTTGCCTTTAACTACAGGGGAATTAGTGACCCACTGACCGTATTTGAACAAACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000018510_MULTIEX1-12/19=11-19
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.162 A=0.000 C2=0.009
Domain overlap (PFAM):
C1:
PF0156518=FAD_binding_4=PD(10.5=40.5)
A:
PF0291314=FAD-oxidase_C=PU(11.2=62.8)
C2:
PF0291314=FAD-oxidase_C=FE(12.0=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAAGCTGTCAAGGACCTCGT
R:
TTGTTCAAATACGGTCAGTGGGT
Band lengths:
162-290
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development