GgaEX6042239 @ galGal3
Exon Skipping
Gene
ENSGALG00000009236 | AGPS
Description
NA
Coordinates
chr7:16838650-16842387:-
Coord C1 exon
chr7:16842279-16842387
Coord A exon
chr7:16841723-16841850
Coord C2 exon
chr7:16838650-16838701
Length
128 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTGTTTTCCTGAAGGAA
3' ss Score
9.51
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTGATTCATATAAAAATGGTAACTCCGAGAGGAATAGTTGAAAAAAACTGTCAAGTACCTCGCATGTCAACAGGACCTGATATCCATCACTTTATTATGGGATCTGAAG
Seq A exon
GAATTCTGGGAGTGGTTACTGAAGTTACGATAAAGATTCGTCCGCTTCCTGAATACCAGAAATACGGCTCCGTGGTCTTCCCCAACTTTGAACGAGGGGTGGCCTGCCTAAGGGAAGTGGCAAAGCAG
Seq C2 exon
AGATGTGCTCCTGCATCAATTCGCCTTGTCGACAACGCACAGTTTCAATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009236-'13-19,'13-17,14-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0156518=FAD_binding_4=PD(9.9=37.8)
A:
PF0291314=FAD-oxidase_C=PU(9.9=62.8)
C2:
PF0291314=FAD-oxidase_C=FE(6.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAACTGTCAAGTACCTCGCA
R:
TGAAACTGTGCGTTGTCGACA
Band lengths:
114-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]