HsaEX0003146 @ hg19
Exon Skipping
Gene
ENSG00000018510 | AGPS
Description
alkylglycerone phosphate synthase [Source:HGNC Symbol;Acc:327]
Coordinates
chr2:178333144-178357927:+
Coord C1 exon
chr2:178333144-178333252
Coord A exon
chr2:178346787-178346914
Coord C2 exon
chr2:178357876-178357927
Length
128 bp
Sequences
Splice sites
3' ss Seq
TTCCCCCTTCTTTTTTTCAGGAA
3' ss Score
12.21
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTGGTTCATATAAAAATGGTAACACCTAGAGGTATAATAGAAAAAAGCTGTCAAGGACCTCGTATGTCAACAGGCCCTGATATCCATCACTTCATCATGGGATCTGAAG
Seq A exon
GAACTCTTGGTGTAATAACAGAAGCTACAATAAAAATCAGACCAGTCCCTGAATACCAAAAGTATGGCTCAGTAGCTTTCCCTAATTTTGAACAAGGAGTAGCCTGTTTAAGAGAAATTGCAAAACAG
Seq C2 exon
AGATGTGCTCCGGCATCTATTCGCCTCATGGACAACAAGCAGTTTCAGTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000018510_MULTIEX1-9/16=8-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.162 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0156518=FAD_binding_4=PD(10.5=40.5)
A:
PF0291314=FAD-oxidase_C=PU(9.9=62.8)
C2:
PF0291314=FAD-oxidase_C=FE(6.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAGCTGTCAAGGACCTCGT
R:
ACTGAAACTGCTTGTTGTCCA
Band lengths:
116-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)