BtaEX0002861 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009897 | AGPS
Description
Bos taurus alkylglycerone phosphate synthase (AGPS), mRNA. [Source:RefSeq mRNA;Acc:NM_001206719]
Coordinates
chr2:19357352-19378492:-
Coord C1 exon
chr2:19378416-19378492
Coord A exon
chr2:19376497-19376609
Coord C2 exon
chr2:19357352-19357409
Length
113 bp
Sequences
Splice sites
3' ss Seq
ATAATAATATTCTTTTGTAGTTT
3' ss Score
7.17
5' ss Seq
TGGGTATGG
5' ss Score
6.23
Exon sequences
Seq C1 exon
GTCATGCGCTTAAACCTCAGGTTTCCTCTATCTTTACATCATTTTTGGATGGATTAAAAAAGTTTTATATTACAAAG
Seq A exon
TTTAAAGGATTTGATCCAAATCAGCTAAGTGTCGCTACATTACTGTTTGAGGGGGACCGTGAGAAGGTTCTTCAGCATGAAAAGCAAGTGTATGACATCGCTGCAAAATTTGG
Seq C2 exon
GCAGCTGCTAGAGAAGAAATCCTCGCTAATGGAGGGAGCCTGTCACATCACCATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009897_MULTIEX1-8/12=7-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0291314=FAD-oxidase_C=FE(9.1=100)
A:
PF0291314=FAD-oxidase_C=FE(13.5=100)
C2:
PF0291314=FAD-oxidase_C=FE(6.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGCGCTTAAACCTCAGGT
R:
CATGGTGATGTGACAGGCTCC
Band lengths:
131-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development