GgaEX1007016 @ galGal4
Exon Skipping
Gene
ENSGALG00000009236 | AGPS
Description
alkylglycerone phosphate synthase [Source:HGNC Symbol;Acc:HGNC:327]
Coordinates
chr7:15231319-15235621:-
Coord C1 exon
chr7:15235545-15235621
Coord A exon
chr7:15233947-15234059
Coord C2 exon
chr7:15231319-15231388
Length
113 bp
Sequences
Splice sites
3' ss Seq
CAAGGATTTTCTCTCTGCAGTTC
3' ss Score
6.92
5' ss Seq
TGGGTATGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
GTCATGCTCTTAAACCACAAGTTGCTTCCATTTTTACATCATTTTTGGATGGACTGAAAAAATTCTACATCACAAAG
Seq A exon
TTCAAAGGATTTGATCCCAACGTACTATGTGTAGCTACCTTGCTCTTTGAGGGTGACAGAGAGAAGGTTCTTCAGCACGAAAAACAAGTCTATGACATTGCCACCAAGTTTGG
Seq C2 exon
TGGCTTGGCAGCTGGAGAAGATAATGGACAGAGAGGATATATGCTGACGTTTGTCATTGCTTACCTTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009236-'27-33,'27-31,29-33
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0291314=FAD-oxidase_C=FE(22.9=100)
A:
PF0291314=FAD-oxidase_C=FE(13.5=100)
C2:
PF0291314=FAD-oxidase_C=FE(8.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCATGCTCTTAAACCACAAGTTGC
R:
CGAAGGTAAGCAATGACAAACGT
Band lengths:
146-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]