HsaEX6016842 @ hg19
Exon Skipping
Gene
ENSG00000018510 | AGPS
Description
alkylglycerone phosphate synthase [Source:HGNC Symbol;Acc:327]
Coordinates
chr2:178362417-178370303:+
Coord C1 exon
chr2:178362417-178362493
Coord A exon
chr2:178364346-178364458
Coord C2 exon
chr2:178370234-178370303
Length
113 bp
Sequences
Splice sites
3' ss Seq
AAATTTTTTTTTTTTTGTAGTTT
3' ss Score
7.07
5' ss Seq
TGGGTATGG
5' ss Score
6.23
Exon sequences
Seq C1 exon
GTCATGCTCTTAAACCTCAGGTTTCCTCTATTTTTACATCATTTTTGGACGGATTAAAAAAGTTTTATATTACAAAG
Seq A exon
TTTAAAGGATTTGACCCAAATCAGCTAAGTGTAGCCACATTACTGTTTGAGGGGGATCGTGAGAAGGTTCTTCAACATGAAAAACAAGTGTATGATATTGCTGCAAAATTTGG
Seq C2 exon
TGGGTTGGCAGCTGGAGAAGATAATGGACAGAGAGGTTATTTGCTGACCTATGTTATTGCATACATTCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000018510-'16-17,'16-16,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0291314=FAD-oxidase_C=FE(9.1=100)
A:
PF0291314=FAD-oxidase_C=FE(13.5=100)
C2:
PF0291314=FAD-oxidase_C=FE(8.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCATGCTCTTAAACCTCAGGT
R:
TCGAATGTATGCAATAACATAGGTCA
Band lengths:
147-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)