RnoEX0007974 @ rn6
Exon Skipping
Gene
ENSRNOG00000001547 | Agps
Description
alkylglycerone phosphate synthase [Source:RGD Symbol;Acc:620364]
Coordinates
chr3:62711890-62719269:+
Coord C1 exon
chr3:62711890-62711966
Coord A exon
chr3:62713893-62714005
Coord C2 exon
chr3:62719200-62719269
Length
113 bp
Sequences
Splice sites
3' ss Seq
TTTTATTTTATATTTCGTAGTTT
3' ss Score
6.94
5' ss Seq
TGGGTATGG
5' ss Score
6.23
Exon sequences
Seq C1 exon
GGCATGCTCTTAAACCTCAGGTCTCCTCTATTTTTACGTCATTTTTGGATGGATTAAAAAAGTTTTATATTACAAAG
Seq A exon
TTTAAAGGATTTGATCCAAATCAAATAAGCGTAGCCACATTACTGTTCGAGGGAGACCGTGAGAAGGTTCTTCAGCATGAAAAACAAGTGTATGACATCGCAGCAAAATTTGG
Seq C2 exon
TGGTCTGGCTGCTGGAGAAGATAACGGGCAGAGGGGTTATTTGCTGACTTATGTCATTGCATACATGCGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001547-'27-24,'27-23,29-24
Average complexity
S
Mappability confidence:
88%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0291314=FAD-oxidase_C=FE(13.4=100)
A:
PF0291314=FAD-oxidase_C=FE(13.5=100)
C2:
PF0291314=FAD-oxidase_C=FE(12.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCATGCTCTTAAACCTCAGGT
R:
ACATAAGTCAGCAAATAACCCCTCT
Band lengths:
131-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]