DreEX6034719 @ danRer10
Exon Skipping
Gene
ENSDARG00000042821 | agps
Description
alkylglycerone phosphate synthase [Source:ZFIN;Acc:ZDB-GENE-031118-14]
Coordinates
chr9:1599580-1602313:-
Coord C1 exon
chr9:1602237-1602313
Coord A exon
chr9:1600701-1600813
Coord C2 exon
chr9:1599580-1599649
Length
113 bp
Sequences
Splice sites
3' ss Seq
TGTTTGTCTGCTGTGGTCAGTTT
3' ss Score
5.64
5' ss Seq
CGGGTAAAA
5' ss Score
5.16
Exon sequences
Seq C1 exon
GTCATGCGCTCAAGCCTCAAGTGTCCTCCATATTCACCTCATTCTTGGACGGGTTGAAAAAATTCTACATCACGAAG
Seq A exon
TTTAAAGGCTTCGACCCTCATCATCTGTGTGTGGCCACGCTGCTGTTTGAGGGGGATCGTGGGAAGGTTCTGCAGCACGAGAAACAGGTTTACGACATCGCAGCCAAATTCGG
Seq C2 exon
GGGTCTGGCAGCAGGAGAGGACAACGGTCAGAGGGGCTACATGCTGACGTTTGTGATCGCCTATCTGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042821-'16-16,'16-15,18-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0291314=FAD-oxidase_C=PU(8.1=69.2)
A:
PF0291314=FAD-oxidase_C=FE(13.5=100)
C2:
PF0291314=FAD-oxidase_C=FE(10.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGCGCTCAAGCCTCAAG
R:
TAGGCGATCACAAACGTCAGC
Band lengths:
139-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]