MmuEX0004287 @ mm9
Exon Skipping
Gene
ENSMUSG00000042410 | Agps
Description
alkylglycerone phosphate synthase [Source:MGI Symbol;Acc:MGI:2443065]
Coordinates
chr2:75726173-75738308:+
Coord C1 exon
chr2:75726173-75726224
Coord A exon
chr2:75732102-75732214
Coord C2 exon
chr2:75738239-75738308
Length
113 bp
Sequences
Splice sites
3' ss Seq
TTTTATTTTATATTTTGTAGTTT
3' ss Score
7.57
5' ss Seq
TGGGTATGG
5' ss Score
6.23
Exon sequences
Seq C1 exon
AGATGTGCTCCTGCATCTATCCGCCTCATGGACAACCAGCAGTTCCAGTTTG
Seq A exon
TTTAAAGGATTTGATCCAAATCAAATAAGTGTAGCCACATTACTGTTCGAGGGAGACCGTGAGAAGGTTCTTCAGCACGAAAAACAAGTGTATGACATCGCAGCAAAATTTGG
Seq C2 exon
TGGTCTGGCTGCTGGAGAAGATAACGGTCAGAGGGGTTATTTGCTGACTTATGTCATTGCATATATTCGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042410_MULTIEX2-2/3=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0291314=FAD-oxidase_C=FE(15.2=100)
A:
PF0291314=FAD-oxidase_C=FE(13.5=100)
C2:
PF0291314=FAD-oxidase_C=FE(8.4=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGCATCTATCCGCCTCAT
R:
ACATAAGTCAGCAAATAACCCCTCT
Band lengths:
98-211
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: