BtaEX0002966 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006305 | AK1
Description
Bos taurus adenylate kinase 1 (AK1), mRNA. [Source:RefSeq mRNA;Acc:NM_001013582]
Coordinates
chr11:98555507-98556819:-
Coord C1 exon
chr11:98556784-98556819
Coord A exon
chr11:98556438-98556601
Coord C2 exon
chr11:98555507-98555623
Length
164 bp
Sequences
Splice sites
3' ss Seq
GAATGGGTGGGCGCTTGCAGGCG
3' ss Score
2.45
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
AGAAGCTGAAGAAAACCAAGATCATCTTTGTGGTGG
Seq A exon
GCGGGCCCGGCTCGGGGAAGGGCACCCAGTGTGAGAAGATTGTGCAGAAGTACGGCTACACCCACCTCTCCACCGGAGACCTCCTGCGGGCCGAGGTCAGCTCGGGCTCGGCTAGGGGCAAGATGCTGTCAGAAATCATGGAGAAGGGGCAGCTGGTGCCACTG
Seq C2 exon
GAGACAGTGCTGGACATGCTCCGAGACGCCATGGTGGCCAAGGTAGATACTTCCAAAGGCTTTCTGATCGACGGCTACCCCCGGGAGGTGCAGCAGGGGGAGGAGTTTGAGCGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006305_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.026
Domain overlap (PFAM):
C1:
PF0040617=ADK=PU(1.3=15.4)
A:
PF0040617=ADK=FE(34.4=100)
C2:
PF0040617=ADK=FE(24.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGCTGAAGAAAACCAAGATCA
R:
CTCAAACTCCTCCCCCTGCT
Band lengths:
147-311
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development