GgaEX1007190 @ galGal4
Exon Skipping
Gene
ENSGALG00000029150 | AK1
Description
Adenylate kinase isoenzyme 1 [Source:UniProtKB/Swiss-Prot;Acc:P05081]
Coordinates
chr17:4878937-4879751:+
Coord C1 exon
chr17:4878937-4878972
Coord A exon
chr17:4879359-4879522
Coord C2 exon
chr17:4879635-4879751
Length
164 bp
Sequences
Splice sites
3' ss Seq
GGCCCTGGTGTGACTTGCAGGTG
3' ss Score
8.62
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
AAAAACTGAAGCACCACAAGATCATCTTCGTGGTGG
Seq A exon
GTGGCCCCGGCTCAGGGAAGGGGACGCAATGCGAGAAGATTGTGCACAAGTATGGGTACACTCACCTCTCCACTGGGGACCTGCTCCGGGCAGAGGTCAGCTCGGGCTCAGAGCGGGGCAAGAAGCTGCAAGCCATCATGGAGAAGGGCGAGCTGGTTCCCCTG
Seq C2 exon
GACACGGTGCTGGACATGCTGCGGGACGCCATGTTGGCTAAGGCAGACACCTCCAAGGGTTTCCTCATTGACGGCTACCCTCGCGAGGTGAAGCAGGGAGAGGAGTTTGAAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000029150-'5-3,'5-1,6-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.109 C2=0.026
Domain overlap (PFAM):
C1:
PF0040617=ADK=PU(1.3=15.4)
A:
PF0040617=ADK=FE(34.4=100)
C2:
PF0040617=ADK=FE(24.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAACTGAAGCACCACAAGATCA
R:
TCAAACTCCTCTCCCTGCTTCA
Band lengths:
146-310
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]