DreEX0012343 @ danRer10
Exon Skipping
Gene
ENSDARG00000001950 | ak1
Description
adenylate kinase 1 [Source:ZFIN;Acc:ZDB-GENE-040822-37]
Coordinates
chr5:70928872-70931348:-
Coord C1 exon
chr5:70931313-70931348
Coord A exon
chr5:70929580-70929743
Coord C2 exon
chr5:70928872-70928988
Length
164 bp
Sequences
Splice sites
3' ss Seq
GTCTGTGTGTGTGTGGTCAGGTG
3' ss Score
8.35
5' ss Seq
CTGGTCAGT
5' ss Score
6.6
Exon sequences
Seq C1 exon
ATAAAATCAAAAATGCTAAGATCGTCTTTGTTGTGG
Seq A exon
GTGGTCCCGGCTCTGGAAAGGGCACTCAGTGTGAGAAGATCGTGGCCAAGTACGGCTACACTCACCTGTCCTCAGGTGACCTGCTGCGCGCGGAGGTGGCGTCCGGTTCAGAAAGAGGCAAGCAGCTGCAGGCCATCATGCAGAAGGGAGAGCTCGTGCCTCTG
Seq C2 exon
GACACCGTTCTGGACATGATCAAAGACGCCATGATCGCCAAGGCTGACGTCTCTAAAGGTTACCTGATCGACGGATACCCTCGAGAGGTCAAGCAGGGGGAGGAGTTTGAGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001950_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040617=ADK=PU(1.3=15.4)
A:
PF0040617=ADK=FE(34.4=100)
C2:
PF0040617=ADK=FE(24.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAAAATGCTAAGATCGTCTTTGT
R:
TTCTTCTCAAACTCCTCCCCCT
Band lengths:
146-310
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]