HsaEX6063150 @ hg38
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr9:127871823-127873061:-
Coord C1 exon
chr9:127873026-127873061
Coord A exon
chr9:127872690-127872838
Coord C2 exon
chr9:127871823-127871939
Length
149 bp
Sequences
Splice sites
3' ss Seq
TGCAGGTGGGCCTGGCTCAGGGA
3' ss Score
-0.07
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
AGAAGCTGAAGAAAACCAAGATCATCTTTGTGGTGG
Seq A exon
GGAAGGGCACCCAGTGTGAGAAGATCGTGCAGAAGTATGGCTACACCCACCTCTCCACCGGGGACCTCCTGCGGTCCGAGGTCAGCTCAGGCTCGGCCAGGGGCAAGAAGCTGTCGGAAATCATGGAGAAGGGGCAGCTGGTTCCACTG
Seq C2 exon
GAGACAGTGTTGGACATGCTCCGGGATGCCATGGTGGCCAAAGTCAATACTTCCAAAGGCTTCCTGATTGATGGCTACCCGCGGGAGGTGCAGCAAGGAGAAGAGTTTGAGCGACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000257524-'13-14,'13-13,15-14
Average complexity
S
Mappability confidence:
0%=0=0%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGCTGAAGAAAACCAAGATCA
R:
CCGTCGCTCAAACTCTTCTCC
Band lengths:
153-302
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains