HsaEX6063150 @ hg19
Exon Skipping
Gene
ENSG00000106992 | AK1
Description
adenylate kinase 1 [Source:HGNC Symbol;Acc:361]
Coordinates
chr9:130634102-130635340:-
Coord C1 exon
chr9:130635305-130635340
Coord A exon
chr9:130634969-130635132
Coord C2 exon
chr9:130634102-130634218
Length
164 bp
Sequences
Splice sites
3' ss Seq
GAATGGGTGGGCGTTTGCAGGTG
3' ss Score
4.3
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
AGAAGCTGAAGAAAACCAAGATCATCTTTGTGGTGG
Seq A exon
GTGGGCCTGGCTCAGGGAAGGGCACCCAGTGTGAGAAGATCGTGCAGAAGTATGGCTACACCCACCTCTCCACCGGGGACCTCCTGCGGTCCGAGGTCAGCTCAGGCTCGGCCAGGGGCAAGAAGCTGTCGGAAATCATGGAGAAGGGGCAGCTGGTTCCACTG
Seq C2 exon
GAGACAGTGTTGGACATGCTCCGGGATGCCATGGTGGCCAAAGTCAATACTTCCAAAGGCTTCCTGATTGATGGCTACCCGCGGGAGGTGCAGCAAGGAGAAGAGTTTGAGCGACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106992-'6-8,'6-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.115 C2=0.064
Domain overlap (PFAM):
C1:
PF0040617=ADK=PU(1.3=15.4)
A:
PF0040617=ADK=FE(34.4=100)
C2:
PF0040617=ADK=FE(24.2=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGCTGAAGAAAACCAAGATCA
R:
CCGTCGCTCAAACTCTTCTCC
Band lengths:
153-317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)