MmuEX6100580 @ mm10
Exon Skipping
Gene
ENSMUSG00000026817 | Ak1
Description
adenylate kinase 1 [Source:MGI Symbol;Acc:MGI:87977]
Coordinates
chr2:32629849-32631192:+
Coord C1 exon
chr2:32629849-32629884
Coord A exon
chr2:32630235-32630398
Coord C2 exon
chr2:32631076-32631192
Length
164 bp
Sequences
Splice sites
3' ss Seq
GAATGCATGGGTGCTTACAGGCG
3' ss Score
2.84
5' ss Seq
CTGGTGAAT
5' ss Score
3.53
Exon sequences
Seq C1 exon
AGAAGCTGAAGAAGGCCAAGATCATCTTTGTGGTGG
Seq A exon
GCGGACCTGGCTCAGGAAAGGGCACCCAGTGCGAGAAGATTGTACAGAAATATGGCTACACCCACCTGTCTACTGGGGACCTGCTTCGGGCAGAAGTCAGCTCTGGATCGGAGAGGGGCAAGAAGCTGTCGGCTATCATGGAGAAGGGAGAGCTAGTGCCACTG
Seq C2 exon
GACACGGTGCTGGACATGCTCCGAGATGCTATGTTAGCCAAAGTGGATTCTTCCAATGGCTTCCTGATCGACGGCTACCCGAGGGAGGTGAAACAGGGAGAAGAATTTGAACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026817-'19-16,'19-12,23-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.085 C2=0.022
Domain overlap (PFAM):
C1:
PF0040617=ADK=PU(1.3=15.4)
A:
PF0040617=ADK=FE(34.4=100)
C2:
PF0040617=ADK=PD(36.9=93.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGCTGAAGAAGGCCAAGA
R:
TCAAATTCTTCTCCCTGTTTCACCT
Band lengths:
146-310
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types