MmuEX6100580 @ mm9
Exon Skipping
Gene
ENSMUSG00000026817 | Ak1
Description
adenylate kinase 1 [Source:MGI Symbol;Acc:MGI:87977]
Coordinates
chr2:32485369-32486712:+
Coord C1 exon
chr2:32485369-32485404
Coord A exon
chr2:32485755-32485918
Coord C2 exon
chr2:32486596-32486712
Length
164 bp
Sequences
Splice sites
3' ss Seq
GAATGCATGGGTGCTTACAGGCG
3' ss Score
2.84
5' ss Seq
CTGGTGAAT
5' ss Score
3.53
Exon sequences
Seq C1 exon
AGAAGCTGAAGAAGGCCAAGATCATCTTTGTGGTGG
Seq A exon
GCGGACCTGGCTCAGGAAAGGGCACCCAGTGCGAGAAGATTGTACAGAAATATGGCTACACCCACCTGTCTACTGGGGACCTGCTTCGGGCAGAAGTCAGCTCTGGATCGGAGAGGGGCAAGAAGCTGTCGGCTATCATGGAGAAGGGAGAGCTAGTGCCACTG
Seq C2 exon
GACACGGTGCTGGACATGCTCCGAGATGCTATGTTAGCCAAAGTGGATTCTTCCAATGGCTTCCTGATCGACGGCTACCCGAGGGAGGTGAAACAGGGAGAAGAATTTGAACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026817-'6-10,'6-8,8-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.091 C2=0.035
Domain overlap (PFAM):
C1:
PF0040617=ADK=PU(1.3=15.4)
A:
PF0040617=ADK=FE(34.4=100)
C2:
PF0040617=ADK=FE(24.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGCTGAAGAAGGCCAAGA
R:
TCAAATTCTTCTCCCTGTTTCACCT
Band lengths:
146-310
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: