BtaEX0003415 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019052 | ANK3
Description
Bos taurus ankyrin 3, node of Ranvier (ankyrin G) (ANK3), mRNA. [Source:RefSeq mRNA;Acc:NM_001105620]
Coordinates
chr28:15980665-15982942:-
Coord C1 exon
chr28:15982745-15982942
Coord A exon
chr28:15981031-15981129
Coord C2 exon
chr28:15980665-15980763
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTTTATGGTACTCTTTTCAGAAA
3' ss Score
8.63
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
GATGACCAAACCCCTCTCCACATTTCTGCCCGACTGGGGAAAGCGGATATAGTACAGCAGTTGTTGCAGCAAGGAGCATCTCCAAATGCAGCGACAACTTCGGGGTACACCCCGCTGCACCTTGCAGCGCGAGAGGGACACGAAGACGTCGCAGCTTTCCTTTTGGATCATGGCGCATCTTTAGCTATAACAACAAAG
Seq A exon
AAAGGATTTACTCCCCTTCATGTGGCAGCAAAATATGGGAAGCTTGAAGTAGCCAATCTCCTGCTGCAGAAAAGTGCATCTCCAGATGCTGCTGGGAAG
Seq C2 exon
AGCGGGCTAACGCCACTGCATGTAGCTGCACATTATGATAATCAGAAAGTGGCTCTTCTGCTTCTGGACCAAGGAGCCTCACCCCACGCGGCTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019052-'15-17,'15-16,16-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.242 A=0.030 C2=0.061
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(88.9=97.0)
A:
PF127962=Ank_2=PU(29.0=81.8)
C2:
PF127962=Ank_2=FE(34.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACAACTTCGGGGTACACC
R:
GTCCAGAAGCAGAAGAGCCAC
Band lengths:
176-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development