GgaEX1065959 @ galGal3
Exon Skipping
Gene
ENSGALG00000003135 | Q90717_CHICK
Description
NA
Coordinates
chr6:10076187-10077851:+
Coord C1 exon
chr6:10076187-10076384
Coord A exon
chr6:10076914-10077012
Coord C2 exon
chr6:10077753-10077851
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTATTTGCTCTCTCTTACAGAAA
3' ss Score
12.44
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GATGACCAAACGCCGCTGCACATTTCTGCTCGACTGGGCAAAGCAGATATAGTGCAGCAGCTGTTACAGCAAGGAGCATCTCCAAATGCAGCTACAACTTCTGGCTATACGCCCTTGCACCTTTCTGCTCGAGAAGGCCATGAAGATGTAGCTTCTGTTCTTTTGGAGCATGGCGCATCTTTAGCTATTATTACCAAG
Seq A exon
AAAGGATTTACTCCTCTACACGTGGCTGCAAAATATGGGAAAATCGAGGTAGCAAACCTCCTGCTTCAGAAGAATGCATCTCCTGATGCTTCTGGAAAG
Seq C2 exon
AGCGGTTTAACACCACTGCATGTAGCTGCACACTACGATAATCAAAAAGTGGCACTCCTACTGTTGGACCAGGGAGCTTCACCTCACGCATCTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003135-'15-17,'15-16,16-17=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.273 A=0.091 C2=0.152
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(90.1=97.0)
A:
PF127962=Ank_2=PU(29.0=81.8)
C2:
PF127962=Ank_2=FE(34.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTATACGCCCTTGCACCTTT
R:
CCCTGGTCCAACAGTAGGAGT
Band lengths:
169-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]