RnoEX6062480 @ rn6
Exon Skipping
Gene
ENSRNOG00000053288 | Ank3
Description
ankyrin 3 [Source:RGD Symbol;Acc:620157]
Coordinates
chr20:20332448-20335025:+
Coord C1 exon
chr20:20332448-20332645
Coord A exon
chr20:20334488-20334586
Coord C2 exon
chr20:20334927-20335025
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTTTACATTTTCCTCTTCAGAAG
3' ss Score
10.12
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
GATGACCAGACCCCACTCCACATTTCAGCCCGACTCGGGAAGGCTGACATAGTGCAACAACTGTTACAGCAAGGAGCGTCCCCGAATGCAGCAACAACTTCCGGGTACACCCCCCTTCACCTTTCGGCCAGAGAGGGGCATGAGGATGTAGCTGCCTTCCTTCTGGACCATGGAGCATCTTTATCCATAACAACAAAG
Seq A exon
AAGGGATTCACGCCTCTGCACGTGGCTGCAAAATATGGGAAGCTTGAAGTGGCAAGTCTCCTGCTGCAGAAGAGTGCGTCTCCTGATGCCGCTGGGAAG
Seq C2 exon
AGCGGGCTAACTCCACTGCATGTAGCAGCACATTACGATAATCAGAAAGTGGCCCTTCTGCTTTTGGACCAGGGAGCCTCACCCCACGCAGCTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053288-'25-31,'25-30,26-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.253 A=0.030 C2=0.061
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(90.1=97.0)
A:
PF127962=Ank_2=PU(29.0=81.8)
C2:
PF127962=Ank_2=FE(34.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAATGCAGCAACAACTTCCG
R:
AAGCAGAAGGGCCACTTTCTG
Band lengths:
179-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]