MmuEX0004915 @ mm10
Exon Skipping
Gene
ENSMUSG00000069601 | Ank3
Description
ankyrin 3, epithelial [Source:MGI Symbol;Acc:MGI:88026]
Coordinates
chr10:69882361-69885237:+
Coord C1 exon
chr10:69882361-69882558
Coord A exon
chr10:69884747-69884845
Coord C2 exon
chr10:69885139-69885237
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTTTACATTTCCCTCTTCAGAAG
3' ss Score
9.9
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
GATGACCAGACTCCACTCCACATCTCAGCCCGACTTGGGAAAGCTGACATAGTGCAACAACTGTTACAGCAAGGAGCATCCCCCAATGCAGCAACAACTTCTGGGTACACCCCCCTTCACCTTGCGGCCAGAGAGGGGCATGAGGATGTAGCTGCGTTCCTCCTGGATCATGGAGCATCTTTATCCATAACAACAAAG
Seq A exon
AAGGGATTCACCCCTCTGCACGTGGCAGCCAAATACGGAAAGCTTGAAGTCGCAAGTCTCCTGCTGCAGAAGAGTGCGTCTCCCGATGCCGCAGGGAAG
Seq C2 exon
AGCGGGCTAACTCCACTGCATGTAGCAGCGCATTACGATAATCAGAAAGTGGCCCTTCTGCTCTTGGACCAGGGAGCCTCACCCCACGCAGCCGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000069601-'45-61,'45-53,48-61=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.242 A=0.030 C2=0.061
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(88.9=97.0)
A:
PF127962=Ank_2=PU(29.0=81.8)
C2:
PF127962=Ank_2=FE(34.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCAGCAACAACTTCTGGGT
R:
CAAGAGCAGAAGGGCCACTTT
Band lengths:
179-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types