DreEX6067856 @ danRer10
Exon Skipping
Gene
ENSDARG00000077582 | ank3b
Description
ankyrin 3b [Source:ZFIN;Acc:ZDB-GENE-060621-2]
Coordinates
chr12:7694711-7723877:-
Coord C1 exon
chr12:7723680-7723877
Coord A exon
chr12:7697125-7697223
Coord C2 exon
chr12:7694711-7694809
Length
99 bp
Sequences
Splice sites
3' ss Seq
CGCACTGCTTGTCTTTGCAGAAG
3' ss Score
9.57
5' ss Seq
AAGGTACTA
5' ss Score
7.52
Exon sequences
Seq C1 exon
GACGATCAGACCCCGTTGCATATATCCAGTCGTCTGGGAAAACCAGACATTGTCCAGCAACTGCTGCAGCATGGGGCTTTACCCGACTCCACCACCACGTCTGGATACACGCCACTGCACCTGGCTGCACGGGACGGCCACAAAGACGTGGCATCCATCCTGCTGGACAACGGAGCCTCTCTTGGCATTACTACCAAG
Seq A exon
AAGGGATTCACTCCACTGCATGTTGCAGCCAAATACGGGAAGATGGAAGTTGCTAACTTACTGCTACAGAAGCGAGCACCGCCTGACGCAGCTGGAAAG
Seq C2 exon
AGTGGACTAACACCACTGCATGTTGCTGCACACTATGATAACCAGAAAGTGGCTCTTCTTCTGTTGGACCAAGGAGCGTCTCCACATGCAGCAGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077582-'22-19,'22-18,24-19=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.394 A=0.091 C2=0.121
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(33.3=47.0),PF0002325=Ank=WD(100=50.0)
A:
PF127962=Ank_2=PD(33.3=93.9)
C2:
PF0002325=Ank=WD(100=100.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGTCTGGATACACGCCAC
R:
CGCTCCTTGGTCCAACAGAAG
Band lengths:
181-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]