GgaEX1065959 @ galGal4
Exon Skipping
Gene
ENSGALG00000003135 | chAnk3
Description
ankyrin 3, node of Ranvier (ankyrin G) [Source:RefSeq peptide;Acc:NP_001264026]
Coordinates
chr6:8415277-8420415:+
Coord C1 exon
chr6:8415277-8415474
Coord A exon
chr6:8416004-8416102
Coord C2 exon
chr6:8420218-8420415
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTATTTGCTCTCTCTTACAGAAA
3' ss Score
12.44
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GATGACCAAACGCCGCTGCACATTTCTGCTCGACTGGGCAAAGCAGATATAGTGCAGCAGCTGTTACAGCAAGGAGCATCTCCAAATGCAGCTACAACTTCTGGCTATACGCCCTTGCACCTTTCTGCTCGAGAAGGCCATGAAGATGTAGCTTCTGTTCTTTTGGAGCATGGCGCATCTTTAGCTATTATTACCAAG
Seq A exon
AAAGGATTTACTCCTCTACACGTGGCTGCAAAATATGGGAAAATCGAGGTAGCAAACCTCCTGCTTCAGAAGAATGCATCTCCTGATGCTTCTGGAAAG
Seq C2 exon
AACGGCTATACACCACTACACATAGCTGCCAAGAAAAACCAGATGGACATAGCGACTACACTGCTGGAATATGGTGCTGATGCCAATGCTGTAACCAGACAGGGTATTGCCCCTGTACATCTGGCCTCTCAGGACGGCCACGTGGACATGGTGTCCTTACTTCTTACTAGAAATGCTAATGTAAATCTCAGCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003135_MULTIEX4-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.273 A=0.091 C2=0.061
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(90.1=97.0)
A:
PF127962=Ank_2=PU(29.0=81.8)
C2:
PF127962=Ank_2=PD(33.3=47.0),PF127962=Ank_2=PU(29.0=40.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGCATGGCGCATCTTTAG
R:
CGTCCTGAGAGGCCAGATGTA
Band lengths:
171-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]