BtaEX0003429 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019052 | ANK3
Description
Bos taurus ankyrin 3, node of Ranvier (ankyrin G) (ANK3), mRNA. [Source:RefSeq mRNA;Acc:NM_001105620]
Coordinates
chr28:15903351-15911877:-
Coord C1 exon
chr28:15911771-15911877
Coord A exon
chr28:15906247-15906471
Coord C2 exon
chr28:15903351-15903505
Length
225 bp
Sequences
Splice sites
3' ss Seq
CCTCTGATCTTCCTCTGCAGGTT
3' ss Score
12.35
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
CATCTAACATTCACAAGAGAATTTGACTCAGATTCTCTTAGACATTACAGCTGGGCTGCAGATACCTTGGACAATGTCAATCTTGTCTCAAGTCCTGTTCATTCCGG
Seq A exon
GTTTCTGGTTAGCTTTATGGTGGATGCTCGAGGGGGCTCCATGAGGGGAAGCCGTCACCACGGGATGAGGATTATCATTCCTCCACGCAAGTGTACGGCCCCCACCCGCATCACCTGCCGTTTGGTAAAGAGACATAAACTGGCCAACCCACCCCCCATGGTGGAAGGAGAGGGATTAGCCAGTAGACTGGTAGAAATGGGTCCTGCAGGGGCACAATTTTTAGG
Seq C2 exon
CCCTGTCATAGTGGAAATCCCTCACTTTGGTTCTATGAGAGGCAAGGAGAGAGAGCTCATTGTTCTTCGCAGTGAAAATGGTGAAACGTGGAAGGAGCATCAGTTTGACAGTAAAAATGAAGATTTAACTGAATTACTTAATGGCATGGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019052_MULTIEX2-2/3=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=0.217 C2=0.201
Domain overlap (PFAM):
C1:
PF0079115=ZU5=PU(1.0=2.8)
A:
PF0079115=ZU5=FE(90.4=100),PF0079115=ZU5=PU(0.1=0.0)
C2:
PF0079115=ZU5=PD(26.7=52.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCTAACATTCACAAGAGAATTTGACT
R:
CTTCATCCATGCCATTAAGTAATTCA
Band lengths:
260-485
Functional annotations
There are 1 annotated functions for this event
PMID: 26024478
The paper describes and annotates all exons to an extreme detail. Wild-type isoform, but not the variants (either skipping 31 or 28-31), bind beta-spectrin. Exon 28 (MmuEX0004926), exon 29 (MmuEX6048924), exon 31 (MmuEX6048923)
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development