GgaEX6039828 @ galGal3
Exon Skipping
Gene
ENSGALG00000003135 | Q90717_CHICK
Description
NA
Coordinates
chr6:10116575-10127645:+
Coord C1 exon
chr6:10116575-10116681
Coord A exon
chr6:10124232-10124456
Coord C2 exon
chr6:10127491-10127645
Length
225 bp
Sequences
Splice sites
3' ss Seq
TTGTTTCCTTTTCCCTGCAGTTT
3' ss Score
11.2
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
CACCTGACGTTTCAGAGGGAGTTTGATTCTGATTCTCTCAGACACTACAGCTGGGCTGCAGACACCTTGGACAATGTTAACCTTGTTTCAAGTCCCATCCATTCTGG
Seq A exon
TTTCCTGGTTAGTTTTATGGTCGATGCACGTGGGGGTTCGATGAGAGGAAGTCGTCATCATGGAATGAGAATTATCATCCCACCACGCAAATGCACAGCGCCAACCCGCATCACCTGCCGCTTGGTAAAGAGGCATAAGCTGGCCAGCCCACCACCAATGGTTGAAGGAGAAGGATTAGCAAGTAGACTTGTAGAAATGGGGCCGGCAGGGGCACAATTCTTAGG
Seq C2 exon
CCCTGTCATAGTGGAAATCCCACATTTTGGATCAATGCGAGGAAAGGAAAGAGAGTTAATCGTACTTCGAAGTGAAAATGGCGAAACGTGGAAGGAGCACCAGTATGACAGCAAGCATGAAGACTTAACTGAAGTACTCAATGGCATGGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003135-'33-35,'33-33,35-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.180 C2=0.327
Domain overlap (PFAM):
C1:
PF0079115=ZU5=PU(1.0=2.8)
A:
PF0079115=ZU5=FE(91.5=100),PF0079115=ZU5=PU(0.1=0.0)
C2:
PF0079115=ZU5=PD(26.7=52.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGACGTTTCAGAGGGAGTTTGA
R:
TCCATGCCATTGAGTACTTCAGT
Band lengths:
253-478
Functional annotations
There are 1 annotated functions for this event
PMID: 26024478
The paper describes and annotates all exons to an extreme detail. Wild-type isoform, but not the variants (either skipping 31 or 28-31), bind beta-spectrin. Exon 28 (MmuEX0004926), exon 29 (MmuEX6048924), exon 31 (MmuEX6048923)
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]