BtaEX0003430 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019052 | ANK3
Description
Bos taurus ankyrin 3, node of Ranvier (ankyrin G) (ANK3), mRNA. [Source:RefSeq mRNA;Acc:NM_001105620]
Coordinates
chr28:15903351-15906471:-
Coord C1 exon
chr28:15906247-15906471
Coord A exon
chr28:15905621-15905719
Coord C2 exon
chr28:15903351-15903505
Length
99 bp
Sequences
Splice sites
3' ss Seq
GCTGCATGGATGTTATTCAGTAA
3' ss Score
0.69
5' ss Seq
TGGGTAGGA
5' ss Score
5.12
Exon sequences
Seq C1 exon
GTTTCTGGTTAGCTTTATGGTGGATGCTCGAGGGGGCTCCATGAGGGGAAGCCGTCACCACGGGATGAGGATTATCATTCCTCCACGCAAGTGTACGGCCCCCACCCGCATCACCTGCCGTTTGGTAAAGAGACATAAACTGGCCAACCCACCCCCCATGGTGGAAGGAGAGGGATTAGCCAGTAGACTGGTAGAAATGGGTCCTGCAGGGGCACAATTTTTAGG
Seq A exon
TAAACTGCATCTTCCCACCAATCCTCCCCCTGTAAATGAGGGTGAGAGCTTGGTTAGCCGAATCCTGCAGCTTGGGCCTCAAGGAACAAAATTTATTGG
Seq C2 exon
CCCTGTCATAGTGGAAATCCCTCACTTTGGTTCTATGAGAGGCAAGGAGAGAGAGCTCATTGTTCTTCGCAGTGAAAATGGTGAAACGTGGAAGGAGCATCAGTTTGACAGTAAAAATGAAGATTTAACTGAATTACTTAATGGCATGGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019052_MULTIEX2-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.217 A=0.500 C2=0.201
Domain overlap (PFAM):
C1:
PF0079115=ZU5=FE(90.4=100),PF0079115=ZU5=PU(0.1=0.0)
A:
PF0079115=ZU5=PD(7.2=17.6),PF0079115=ZU5=PU(53.2=97.1)
C2:
PF0079115=ZU5=PD(26.7=52.8)
Main Inclusion Isoform:
ENSBTAT00000061228fB564
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGGTGGAAGGAGAGGGAT
R:
GCTCCTTCCACGTTTCACCAT
Band lengths:
168-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development