HsaEX0004147 @ hg38
Exon Skipping
Gene
ENSG00000151150 | ANK3
Description
ankyrin 3 [Source:HGNC Symbol;Acc:HGNC:494]
Coordinates
chr10:60105905-60109054:-
Coord C1 exon
chr10:60108830-60109054
Coord A exon
chr10:60108188-60108286
Coord C2 exon
chr10:60105905-60106059
Length
99 bp
Sequences
Splice sites
3' ss Seq
GCTGCATGGATGTTATTCAGTAA
3' ss Score
0.69
5' ss Seq
TGGGTAGGA
5' ss Score
5.12
Exon sequences
Seq C1 exon
GTTTCTGGTTAGCTTTATGGTGGACGCGAGAGGGGGCTCCATGAGAGGAAGCCGTCATCACGGGATGAGAATCATCATTCCTCCACGCAAGTGTACGGCCCCCACTCGAATCACCTGCCGTTTGGTAAAGAGACATAAACTGGCCAACCCACCCCCCATGGTGGAAGGAGAGGGATTAGCCAGTAGGCTGGTAGAAATGGGTCCTGCAGGGGCACAATTTTTAGG
Seq A exon
TAAACTGCATCTTCCTACCAATCCTCCCCCTGTAAATGAGGGTGAGAGCTTGGTTAGCCGAATCCTGCAGCTTGGGCCTCAAGGAACAAAATTTATTGG
Seq C2 exon
CCCTGTCATAGTGGAAATCCCTCACTTTGGGTCCATGAGAGGAAAAGAGAGAGAACTCATTGTTCTTCGAAGTGAAAATGGTGAAACTTGGAAGGAGCATCAGTTTGACAGCAAAAATGAAGATTTAACCGAGTTACTTAATGGCATGGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151150-'95-87,'95-86,96-87
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.217 A=0.529 C2=0.318
Domain overlap (PFAM):
C1:
PF0079115=ZU5=PU(71.2=98.7)
A:
PF0079115=ZU5=PD(8.3=20.6),PF0079115=ZU5=PU(52.5=94.1)
C2:
PF0079115=ZU5=PD(26.7=52.8)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGGTGGAAGGAGAGGGAT
R:
TGCTGTCAAACTGATGCTCCT
Band lengths:
183-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development