RnoEX0009384 @ rn6
Exon Skipping
Gene
ENSRNOG00000053288 | Ank3
Description
ankyrin 3 [Source:RGD Symbol;Acc:620157]
Coordinates
chr20:20408425-20411476:+
Coord C1 exon
chr20:20408425-20408649
Coord A exon
chr20:20409172-20409270
Coord C2 exon
chr20:20411322-20411476
Length
99 bp
Sequences
Splice sites
3' ss Seq
GCTGCATGGATGTCACTCAGTAA
3' ss Score
-0.37
5' ss Seq
TGGGTAGGA
5' ss Score
5.12
Exon sequences
Seq C1 exon
GTTTCTGGTTAGCTTTATGGTGGACGCGAGAGGGGGCTCCATGCGAGGAAGCCGCCACCACGGGATGCGGATCATCATCCCTCCGCGCAAGTGTACGGCCCCCACCCGCATCACTTGCCGCCTGGTAAAGAGACATAAACTGGCCAACCCACCCCCCATGGTGGAAGGAGAGGGATTAGCCAGTAGGCTGGTAGAAATGGGTCCTGCGGGGGCACAATTTTTAGG
Seq A exon
TAAACTGCACCTTCCCACCCATCCTCCCCCTGTAAATGAGGGCGAGGGCTTGGTTAGCCGAATCCTGCAGCTTGGGCCTCAAGGAACAAAATTTATTGG
Seq C2 exon
CCCGGTCATAGTGGAAATCCCTCATTTTGGGTCCATGAGAGGAAAGGAGAGGGAACTCATTGTCCTCCGGAGCGAGAACGGAGAGACCTGGAAGGAACACCAGTTTGACAGCAAAAACGAAGACCTCTCGGAGCTCCTCAATGGCATGGACGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053288_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.218 A=0.529 C2=0.337
Domain overlap (PFAM):
C1:
PF0079115=ZU5=FE(71.4=100)
A:
PF0079115=ZU5=PD(8.3=20.6),PF0079115=ZU5=PU(52.5=94.1)
C2:
PF0079115=ZU5=PD(26.7=52.8)
Main Inclusion Isoform:
ENSRNOT00000079630fB1070
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGGTGGAAGGAGAGGGAT
R:
TGTTCCTTCCAGGTCTCTCCG
Band lengths:
169-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]